Here is a photo of my open ECU. If you look at the top left of the ECU in yours there will be a board on the gap that sits vertically on the board. If you rock it back and forth it will easily snap off. Follow the wiring guide below and it will run perfectly without all the extra stuff.
My car runs and idles but I need to replace an injector so I still have not driven it yet
Attachment:
S2000 ECU.jpg
I have no idea if this would work for the Miata ECU. I would open it up and see if there is a similar board that can be removed, if so try it, worst that can happen is you need another ECU for $50-$100
Here is the relevant wiring information kindly provided to me by Tongboy but I think it came from an S2000 forum.
C101 connector
1 - ignition system BLK/YEL +12v - connect to the ignition key
--2- Air conditioning- not connected
3- starter motor -BLK/WHT- +12v through starter motor switch
4- YEL/BLK +12v from ignition switch- power supply to ECM
5 -BLK/YEL +12v lambda sensor - connect to ignition key
--6- YEL/BLU air pump - not connected if you do not use air pump
7- WHT/BLU - alternator light(on the dashboard) required to get charge!
8- BLU/WHT - VSS sensor connected probably to the speedo gauge - must loop back to ecu A9
--9- YEL/RED - low pressure warning light(on the dashboard)
10- WHT/RED +12v ECM/ immobilizer light - hot at all times
--11- YEL DRL indicator light- probably check engine light but not sure- in my car it is not connected
--12- GRN/YEL - not connected
--13 - WHT/BLK - secondary air injection system- not connected
14 - BLK- ground
--15 -BRN/YEL - DATA LINK CONNECTOR - this is only one of few wires that go to data link connector- rest is probably in the ECU 32P socket.
--16- GRN/YEL air pump - not connected
other connectors that are meaningful - really depends on how much of the honda wiring you keep around.
A15 immo fuel pump relay - goes to fuel pump relay to enable fuel pump
a20 rad fan control - goes to fan relay to enable fan
a24 start switch signal - to starter motor switch
a32 brake pedal position switch - normally open
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